| ID | Title/Authors |
| 19 | Using a Kernel Density Estimation Based Classifier to Predict Species-Specific microRNA Precursors Tien-Hao Chang, Chih-Ching Wang and Jian-Wei Chen |
| 20 | Predicted Mouse Peroxisome-targeted Proteins and their Actual Subcellular Locations Yumi Mizuno, Igor V. Kurochkin, Marlis Herberth, Yasushi Okazaki and Christian Schoenbach |
| 32 | VarDetect: a Nucleotide Sequence Variation Exploratory Tool Chumpol Ngamphiw, Supasak Kulawonganunchai, Anunchai Assawamakin, Ekachai Jenwitheesuk and Sissades Tongsima |
| 38 | FANS: Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes Chuan-Kun Liu, Yan-Hau Chen, Cheng-Yang Tang, Shu-Chuan Chang, Yi-Jung Lin, Ming-Fang Tsai, Yuan-Tsong Chen and Adam Yao |
| 43 | Molecular Identification of the Indian Liver Fluke, Fasciola (Trematoda: Fasciolidae) Based on the Ribosomal Internal Transcribed Spacer Regions Pramod Prasad, Veena tandon, Devendra Biswal, Lalit Goswami and Anupam Chatterjee |
| 44 | Dynamic Sensitivity Analysis of Biological Systems Feng-Sheng Wang, Wu-Hsiung Wu and Maw-Shang Chang |
| 46 | WSPMaker: Window-Sliding Selection Pressure Plot Maker for Proteins and Domains Yong Seok Lee, Tae-Hyung Kim, Tae-Wook Kang, Won-Hyong Chung and Gwang-Sik Shin |
| 52 | Real Value Prediction of Protein Solvent Accessibility Using Enhanced PSSM Features Tien-Hao Chang, Hsuan-Yu Huang and Yu-Tang Syu |
| 66 | In-silico Insight to Predict and Analyse Putative Metal Binding Sites for Phytoremediation in MAP's. Ashok Sharma, Sudeep Roy, Kumar Parijat Tripathi, Manoj Mishra, Pratibha Roy, Feroz Khan and Abha Meena |
| 72 | Ab-origin: An Enhanced Tool to Identify the Sourcing Gene Segments in Germline for Rearranged Antibodies Wang Xiaojing, Zhiwei Cao, Yixue Li, Di Wu, Siyuan Zheng, Jing Sun and Lin Tao |
| 73 | Molecular Docking Studies of Dithionitrobenzoic Acid and its Related Compounds to Protein Disulfide Isomerase: Computational Screening of Inhibitors to Prevent HIV-1 Entry U Gowthaman, M Jayakanthan and D Sundar |
| 74 | Filtering of False Positive microRNA Candidates by a Clustering-Based Approach Wing-Sze Leung, Marie Chia-Mi Lin, David W. L. Cheung and SM Yiu |
| 75 | MiRTif: a Support Vector Machine-Based microRNA Target Interaction Filter Yuchen Yang, Yu-Ping Wang and Kuo-Bin Li |
| 79 | An Integrated Korean Biodiversity and Genetic Information Retrieval System Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park and Woon-Kee Paek |
| 84 | Semi-Automatic Conversion Between Biomedical Predicate Argument Structure Standards Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang and Wen-Lian Hsu |
| 86 | Fast Splice Site Detection Using Information Content and Feature Reduction Baten A K M Abdul, Saman Halgamuge and Bill Chang |
| 87 | Discovering Amino Acid Patterns on Binding Sites in Protein Complexes Huang-Cheng Kuo, Ping-Lin Ong, Jung Chang Lin and Jen-Peng Huang |
| 92 | An Integrated Database for Disease, Genetic Variation and Gene Jin Ok Yang, Sohyun Hwang, Jong Bhak, Jeongsu Oh and Tae-Kwon Sohn |
| 93 | Some High-affinity MicroRNA Recognition Elements (MREs) Are Associated with Alternative Splicing Events Cheng-Tao Wu, Chien-Ying Chiou and Ueng-Cheng Yang |
| 95 | Orthologs-Based Protein-Protein Interaction Prediction and Its Application in Inter-Species Interactions Sheng-An Lee, Chen-Hsiung Chan, Chia-Ying Yang, Kun-Mao Chao, Kao Cheng-Yan, Jin-Mei Lai, Feng-Sheng Wang and Chi-Ying F. Huang |
| 96 | Finding microRNA Regulatory Modules in Human Genome Using Rule Induction Dang Hung Tran, Kenji Satou and Tu Bao Ho |
| 97 | Extracting Transcription Factor Binding Sites from Unaligned Gene Sequenceswith Statistical Models Chung-Chin Lu, Wei-Hao Yuan and Te-Ming Chen |
| 101 | PEIMAP: a Database of Protein Experimental Interactome Map Jea-woon Ryu, Byoung-chul Kim, Daeui Park, seong-Woong Cho, Sungsam Gong, Dan Bolser and Jong Bhak |
| 102 | Nonnegative Principal Component Analysis for Microarray Pattern Classification and Biomarker Discovery Xiaoxu Han |
| 103 | Verification of Biomedical Ontologies Muhammad Fahad and Muhammad Abdul Qadir |
| 105 | CMKb: a web based prototype for integrating Australian Aboriginal customary medicinal plant knowledge Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen and Shoba Ranganathan |
| 106 | The Value of Position-Specific Scoring Matrices for Assessment of Protein Allergenicity Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew and Martti Tammi |
| 107 | Predicting RNA-Binding Sites of Proteins Using Support Vector Machines and Evolutionary Information Cheng-Wei Cheng, Emily Chia-Yu Su, Ting-Yi Sung and Wen-Lian Hsu |
| 115 | Flanking Signal and Mature Peptide Residues Influence Signal Peptide Cleavage Khar Heng Choo and Shoba Ranganathan |
| 117 | Evaluation of HLA-II Peptide Binding Prediction Servers: Applications for Vaccine Research Hong Huang Lin, Guang Lan Zhang, Songsak Tongchusak, Ellis Reinherz and Vladimir Brusic |
| 118 | A Protein Interaction Based Model for Schizophrenia Study Pei-chun Hsu, Ueng-Cheng Yang, Kuan-Hui Shih, Hai-Gwo Hwu, Chih-Min Liu and Yu-Li Liu |
| ID | Title/Authors |
| 15 | The Proteomic Code: a Molecular Recognition Code for Proteins Jan Biro |
| 23 | Molecular Modeling Study on Chemically Diverse Series of Cyclooxygenase-2 Selective Inhibitors: Generation of Predictive Pharmacophore Model Using Catalyst Madhu Chopra and Ruby Gupta |
| 54 | A Pattern Recognition Approach to Infer Time-Lagged Genetic Interactions Cheng-Long Chuang, Chih-Hung Jen, Chung-Ming Chen and Grace S. Shieh |
| 60 | PredictBias: a Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes Sachin Pundhir, Hemant Vijaywargiya and Anil Kumar |
| 67 | Identification of SSR-ESTs Corresponding to Alkaloid, Phenylpropanoid and Terpenoid Biosynthesis in MAP's Kumar Parijat Tripathi, Sudeep Roy, Feroz Khan, Ajit Kumar Shasany, Ashok Sharma and S.P.S Khanuja |
| 77 | Modulation of the p53-MDM2 Pathway Interaction by Phosphorylation of Thr18: a Computational Study Hui Jun Lee, David Coomber, David Lane, Chandra Verma and Deepa Srinivasan |
| 91 | Prediction of Protein Subcellular Localization: Implications for Protein Function and Protein Interaction Network Emily Chia-Yu Su, Jia-Ming Chang, Allan Lo, Hua-Sheng Chiu, Ting-Yi Sung and Wen-Lian Hsu |
| 111 | Signature Evaluation Tool (SET): a Java-Based Tool to Evaluate and Visualize the Sample Discrimination Abilities of Gene Expression signatures Chih-Hung Jen, Tsun-Po Yang, Chien-Yi Tung, Shu-Han Su, Chi-Hung Lin, Ming-Ta Hsu and Hsei-Wei Wang |
| ID | Title/Authors |
| 88 | A Comprehensive and an Update Antibiotic Database on Essential Features of Antibiotics of Microbial Origin with special Emphasis on Bioinformatics Rajarajan Swaminathan, Priya Roosvelt, Indu Purushothaman, Yogambal Muthu and MadhanMohan Thangavel |
| 89 | BIOSMILE Web Search: a Web Application for Annotating Biomedical Entities and Relations Hong-Jie Dai, Chi-Hsin Huang, Ryan T.K. Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai and Wen-Lian Hsu |