Oral Presentation

Information for Oral Presentation

  • Each presentation slot is 20 minutes, which consists of approx. 15 minutes talk and approx. 5 minutes discussions.
  • Your presentation will be in Powerpoint or PDF, using the Conference laptop (PC). If you require special arrangement for your presentation, please inform us as soon as possible.
  • Please provide CD or USB flash memory containing your presentation file to our staff at the information desk at least half day before your presentation.

Accepted Papers

Full Paper
ID Title/Authors
19 Using a Kernel Density Estimation Based Classifier to Predict Species-Specific microRNA Precursors
Tien-Hao Chang, Chih-Ching Wang and Jian-Wei Chen
20 Predicted Mouse Peroxisome-targeted Proteins and their Actual Subcellular Locations
Yumi Mizuno, Igor V. Kurochkin, Marlis Herberth, Yasushi Okazaki and Christian Schoenbach
32 VarDetect: a Nucleotide Sequence Variation Exploratory Tool
Chumpol Ngamphiw, Supasak Kulawonganunchai, Anunchai Assawamakin, Ekachai Jenwitheesuk and Sissades Tongsima
38 FANS: Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes
Chuan-Kun Liu, Yan-Hau Chen, Cheng-Yang Tang, Shu-Chuan Chang, Yi-Jung Lin, Ming-Fang Tsai, Yuan-Tsong Chen and Adam Yao
43 Molecular Identification of the Indian Liver Fluke, Fasciola (Trematoda: Fasciolidae) Based on the Ribosomal Internal Transcribed Spacer Regions
Pramod Prasad, Veena tandon, Devendra Biswal, Lalit Goswami and Anupam Chatterjee
44 Dynamic Sensitivity Analysis of Biological Systems
Feng-Sheng Wang, Wu-Hsiung Wu and Maw-Shang Chang
46 WSPMaker: Window-Sliding Selection Pressure Plot Maker for Proteins and Domains
Yong Seok Lee, Tae-Hyung Kim, Tae-Wook Kang, Won-Hyong Chung and Gwang-Sik Shin
52 Real Value Prediction of Protein Solvent Accessibility Using Enhanced PSSM Features
Tien-Hao Chang, Hsuan-Yu Huang and Yu-Tang Syu
66 In-silico Insight to Predict and Analyse Putative Metal Binding Sites for Phytoremediation in MAP's.
Ashok Sharma, Sudeep Roy, Kumar Parijat Tripathi, Manoj Mishra, Pratibha Roy, Feroz Khan and Abha Meena
72 Ab-origin: An Enhanced Tool to Identify the Sourcing Gene Segments in Germline for Rearranged Antibodies
Wang Xiaojing, Zhiwei Cao, Yixue Li, Di Wu, Siyuan Zheng, Jing Sun and Lin Tao
73 Molecular Docking Studies of Dithionitrobenzoic Acid and its Related Compounds to Protein Disulfide Isomerase: Computational Screening of Inhibitors to Prevent HIV-1 Entry
U Gowthaman, M Jayakanthan and D Sundar
74 Filtering of False Positive microRNA Candidates by a Clustering-Based Approach
Wing-Sze Leung, Marie Chia-Mi Lin, David W. L. Cheung and SM Yiu
75 MiRTif: a Support Vector Machine-Based microRNA Target Interaction Filter
Yuchen Yang, Yu-Ping Wang and Kuo-Bin Li
79 An Integrated Korean Biodiversity and Genetic Information Retrieval System
Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park and Woon-Kee Paek
84 Semi-Automatic Conversion Between Biomedical Predicate Argument Structure Standards
Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang and Wen-Lian Hsu
86 Fast Splice Site Detection Using Information Content and Feature Reduction
Baten A K M Abdul, Saman Halgamuge and Bill Chang
87 Discovering Amino Acid Patterns on Binding Sites in Protein Complexes
Huang-Cheng Kuo, Ping-Lin Ong, Jung Chang Lin and Jen-Peng Huang
92 An Integrated Database for Disease, Genetic Variation and Gene
Jin Ok Yang, Sohyun Hwang, Jong Bhak, Jeongsu Oh and Tae-Kwon Sohn
93 Some High-affinity MicroRNA Recognition Elements (MREs) Are Associated with Alternative Splicing Events
Cheng-Tao Wu, Chien-Ying Chiou and Ueng-Cheng Yang
95 Orthologs-Based Protein-Protein Interaction Prediction and Its Application in Inter-Species Interactions
Sheng-An Lee, Chen-Hsiung Chan, Chia-Ying Yang, Kun-Mao Chao, Kao Cheng-Yan, Jin-Mei Lai, Feng-Sheng Wang and Chi-Ying F. Huang
96 Finding microRNA Regulatory Modules in Human Genome Using Rule Induction
Dang Hung Tran, Kenji Satou and Tu Bao Ho
97 Extracting Transcription Factor Binding Sites from Unaligned Gene Sequenceswith Statistical Models
Chung-Chin Lu, Wei-Hao Yuan and Te-Ming Chen
101 PEIMAP: a Database of Protein Experimental Interactome Map
Jea-woon Ryu, Byoung-chul Kim, Daeui Park, seong-Woong Cho, Sungsam Gong, Dan Bolser and Jong Bhak
102 Nonnegative Principal Component Analysis for Microarray Pattern Classification and Biomarker Discovery
Xiaoxu Han
103 Verification of Biomedical Ontologies
Muhammad Fahad and Muhammad Abdul Qadir
105 CMKb: a web based prototype for integrating Australian Aboriginal customary medicinal plant knowledge
Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen and Shoba Ranganathan
106 The Value of Position-Specific Scoring Matrices for Assessment of Protein Allergenicity
Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew and Martti Tammi
107 Predicting RNA-Binding Sites of Proteins Using Support Vector Machines and Evolutionary Information
Cheng-Wei Cheng, Emily Chia-Yu Su, Ting-Yi Sung and Wen-Lian Hsu
115 Flanking Signal and Mature Peptide Residues Influence Signal Peptide Cleavage
Khar Heng Choo and Shoba Ranganathan
117 Evaluation of HLA-II Peptide Binding Prediction Servers: Applications for Vaccine Research
Hong Huang Lin, Guang Lan Zhang, Songsak Tongchusak, Ellis Reinherz and Vladimir Brusic
118 A Protein Interaction Based Model for Schizophrenia Study
Pei-chun Hsu, Ueng-Cheng Yang, Kuan-Hui Shih, Hai-Gwo Hwu, Chih-Min Liu and Yu-Li Liu
Highlights Track
ID Title/Authors
15 The Proteomic Code: a Molecular Recognition Code for Proteins
Jan Biro
23 Molecular Modeling Study on Chemically Diverse Series of Cyclooxygenase-2 Selective Inhibitors: Generation of Predictive Pharmacophore Model Using Catalyst
Madhu Chopra and Ruby Gupta
54 A Pattern Recognition Approach to Infer Time-Lagged Genetic Interactions
Cheng-Long Chuang, Chih-Hung Jen, Chung-Ming Chen and Grace S. Shieh
60 PredictBias: a Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes
Sachin Pundhir, Hemant Vijaywargiya and Anil Kumar
67 Identification of SSR-ESTs Corresponding to Alkaloid, Phenylpropanoid and Terpenoid Biosynthesis in MAP's
Kumar Parijat Tripathi, Sudeep Roy, Feroz Khan, Ajit Kumar Shasany, Ashok Sharma and S.P.S Khanuja
77 Modulation of the p53-MDM2 Pathway Interaction by Phosphorylation of Thr18: a Computational Study
Hui Jun Lee, David Coomber, David Lane, Chandra Verma and Deepa Srinivasan
91 Prediction of Protein Subcellular Localization: Implications for Protein Function and Protein Interaction Network
Emily Chia-Yu Su, Jia-Ming Chang, Allan Lo, Hua-Sheng Chiu, Ting-Yi Sung and Wen-Lian Hsu
111 Signature Evaluation Tool (SET): a Java-Based Tool to Evaluate and Visualize the Sample Discrimination Abilities of Gene Expression signatures
Chih-Hung Jen, Tsun-Po Yang, Chien-Yi Tung, Shu-Han Su, Chi-Hung Lin, Ming-Ta Hsu and Hsei-Wei Wang
Technology Track
ID Title/Authors
88 A Comprehensive and an Update Antibiotic Database on Essential Features of Antibiotics of Microbial Origin with special Emphasis on Bioinformatics
Rajarajan Swaminathan, Priya Roosvelt, Indu Purushothaman, Yogambal Muthu and MadhanMohan Thangavel
89 BIOSMILE Web Search: a Web Application for Annotating Biomedical Entities and Relations
Hong-Jie Dai, Chi-Hsin Huang, Ryan T.K. Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai and Wen-Lian Hsu