• Orthologs-Based Protein-Protein Interaction Prediction and its Application in Inter-Species Interactions
  Sheng-An Lee, Chen-Hsiung Chan, Chia-Ying Yang, Kun-Mao Chao, Kao Cheng-Yan, Jin-Mei Lai, Feng-Sheng Wang and Chi-Ying F. Huang
• A Protein Interaction Based Model for Schizophrenia Study
  Pei-chun Hsu, Ueng-Cheng Yang, Kuan-Hui Shih, Hai-Gwo Hwu, Chih-Min Liu and Yu-Li Liu
• Dynamic Sensitivity Analysis of Biological Systems
  Feng-Sheng Wang, Wu-Hsiung Wu and Maw-Shang Chang

• Extracting Transcription Factor Binding Sites from Unaligned Gene Sequenceswith Statistical Models
  Chung-Chin Lu, Wei-Hao Yuan and Te-Ming Chen
• Predicting RNA-Binding Sites of Proteins Using Support Vector Machines and Evolutionary Information
  Cheng-Wei Cheng, Emily Chia-Yu Su, Ting-Yi Sung and Wen-Lian Hsu
  
• In-silico Insight to Predict and Analyse Putative Metal Binding Sites for Phytoremediation in MAP's
  Ashok Sharma, Sudeep Roy, Kumar Parijat Tripathi, Manoj Mishra, Pratibha Roy, Feroz Khan and Abha Meena

• Prediction of Protein Subcellular Localization: Implications for Protein Function and Protein Interaction Network
  Emily Chia-Yu Su, Jia-Ming Chang, Allan Lo, Hua-Sheng Chiu, Ting-Yi Sung and Wen-Lian Hsu
• PredictBias: a Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes
  Sachin Pundhir, Hemant Vijaywargiya and Anil Kumar

Technology/Demonstration

• A Comprehensive and an Update Antibiotic Database on Essential Features of Antibiotics of Microbial Origin with special Emphasis on Bioinformatics
  Rajarajan Swaminathan, Priya Roosvelt, Indu Purushothaman, Yogambal Muthu and MadhanMohan Thangavel
• BIOSMILE Web Search: a Web Application for Annotating Biomedical Entities and Relations
  Hong-Jie Dai, Chi-Hsin Huang, Ryan T.K. Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai and Wen-Lian Hsu

• Using a Kernel Density Estimation Based Classifier to Predict Species-Specific microRNA Precursors
  Tien-Hao Chang, Chih-Ching Wang and Jian-Wei Chen
• Filtering of False Positive microRNA Candidates by a Clustering-Based Approach
  Wing-Sze Leung, Marie Chia-Mi Lin, David W. L. Cheung and SM Yiu
• Finding microRNA Regulatory Modules in Human Genome Using Rule Induction
  Dang Hung Tran, Kenji Satou and Tu Bao Ho

• Ab-origin: An Enhanced Tool to Identify the Sourcing Gene Segments in Germline for Rearranged Antibodies
  Wang Xiaojing, Zhiwei Cao, Yixue Li, Di Wu, Siyuan Zheng, Jing Sun and Lin Tao
• The Value of Position-Specific Scoring Matrics for Assessment of Protein Allergenicity
  Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew and Martti Tammi
• Evaluation of HLA-II Peptide Binding Prediction Servers: Applications for Vaccine Research
  Hong Huang Lin, Guang Lan Zhang, Songsak Tongchusak, Ellis Reinherz and Vladimir Brusic
  

• Predicted Mouse Peroxisome-targeted Proteins and their Actual Subcellular Locations
  Yumi Mizuno, Igor V. Kurochkin, Marlis Herberth, Yasushi Okazaki and Christian Schoenbach
• Fast Splice Site Detection Using Information Content and Feature Reduction
  Baten A K M Abdul, Saman Halgamuge and Bill Chang
• Semi-Automatic Conversion Between Biomedical Predicate Argument Structure Standards
  Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang and Wen-Lian Hsu

• Real value prediction of protein solvent accessibility using enhanced PSSM features
  Tien-Hao Chang, Hsuan-Yu Huang and Yu-Tang Syu
• Discovering Amino Acid Patterns on Binding Sites in Protein Complexes
  Huang-Cheng Kuo, Ping-Lin Ong, Jung Chang Lin and Jen-Peng Huang
• Flanking Signal and Mature Peptide Residues Influence Signal Peptide Cleavage
  Khar Heng Choo and Shoba Ranganathan

• VarDetect: a Nucleotide Sequence Variation Exploratory Tool
  Chumpol Ngamphiw, Supasak Kulawonganunchai, Anunchai Assawamakin, Ekachai Jenwitheesuk and Sissades Tongsima
• FANS: Functional Analysis of Novel SNPs and Mutations in Human and Mouse Genomes
  Chuan-Kun Liu, Yan-Hau Chen, Cheng-Yang Tang, Shu-Chuan Chang, Yi-Jung Lin, Ming-Fang Tsai, Yuan-Tsong Chen and Adam Yao
• An Integrated Database for Disease, Genetic Variation and Gene
  Jin Ok Yang, Sohyun Hwang, Jong Bhak, Jeongsu Oh and Tae-Kwon Sohn

• WSPMaker: Window-Sliding Selection Pressure Plot Maker for Proteins and Domains
  Yong Seok Lee, Tae-Hyung Kim, Tae-Wook Kang, Won-Hyong Chung and Gwang-Sik Shin
• Use of Sequence Motifs as Barcodes and Secondary Structures of Internal Transcribed Spacer 2 (IT2, rDNA) for Identification of Indian Liver Fluke, Fasciole (Trematoda: Fasciolide) 
  Pramod Prasad, Veena tandon, Devendra Biswal, Lalit Goswami and Anupam Chatterjee
• Molecular Docking Studies of Dithionitrobenzoic Acid and its Related Compounds to Protein Disulfide Isomerase: Computational Screening of Inhibitors to Prevent HIV-1 Entry
  U Gowthaman, M Jayakanthan and D Sundar

• PEIMAP: a Database of Protein Experimental Interactome Map
  Jea-woon Ryu, Byoung-chul Kim, Daeui Park, seong-Woong Cho, Sungsam Gong, Dan Bolser and Jong Bhak
• CMKb: a web based prototype for integrating Australian Aboriginal customary medicinal plant knowledge
  Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen and Shoba Ranganathan
• An integrated Korea Biodiversity Information Retrieval System
  Jeongheui Lim, Jong Bhak, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park and Woon-Kee Paek

• Identification of SSR-ESTs Corresponding to Alkaloid, Phenylpropanoid and Terpenoid Biosynthesis in MAP's
  Kumar Parijat Tripathi, Sudeep Roy, Feroz Khan, Ajit Kumar Shasany, Ashok Sharma and S.P.S Khanuja
• A Pattern Recognition Approach to Infer Time-Lagged Genetic Interactions
  Cheng-Long Chuang, Chih-Hung Jen, Chung-Ming Chen and Grace S. Shieh
• Signature Evaluation Tool (SET): a Java-Based Tool to Evaluate and Visualize the Sample Discrimination Abilities of Gene Expression signatures
  Chih-Hung Jen, Tsun-Po Yang, Chien-Yi Tung, Shu-Han Su, Chi-Hung Lin, Ming-Ta Hsu and Hsei-Wei Wang

• Some High-affinity MicroRNA Recognition Elements (MREs) Are Associated with Alternative Splicing Events
  Cheng-Tao Wu, Chien-Ying Chiou and Ueng-Cheng Yang
• MiRTif: a Support Vector Machine-Based microRNA Target Interaction Filter
  Yuchen Yang, Yu-Ping Wang and Kuo-Bin Li

1. BioSlax and BioSlax Server: A Complete Freeware Open Source Solution for your Practical Bioinformatics Course
   Justin Choo and Mark De Silva, Singapore
2. Asian Variome Project (AVP).
   Jong Bhak, KOBIC, Korea.
3. Information Visualization for High Dimensional Biomedical Data: the Matrix Visualization Approach
   Chun-Houh Chen, Academia Sinica, Taiwan

1. Biological Networks: Insight from Interactions
   Prashanth Suravajhala, Roskilde University, Greater Copenhagen
2. IUBMB-FAOBMB-APBioNet Workshop on Education in Bioinformatics and Computational Biology (WEBCB)
   
3. FAOBMB Workshop
   Bioinformatics and systems approaches for disease study
   Ueng-Cheng Yang, National Yang Ming University, Taiwan